Bioconductor RNA seq

Showing : RNA seq • reset

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3.6k

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deseq2 mahattan plot RNA Seq

updated 4.4 years ago by bernatgel ▴ 150 • written 5.4 years ago by adeler001 • 0

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4.1k

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batch effect limma rna seq DE

updated 4.9 years ago by Steve Lianoglou ★ 13k • written 4.9 years ago by svlachavas ▴ 840

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1.1k

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RNA seq cpm

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by isabel.pieterse • 0

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1.2k

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sgseq alternative splicing rna seq

updated 7 months ago by Sara • 0 • written 5.3 years ago by 116100016 • 0

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1.2k

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edger RNA Seq

updated 5.3 years ago by James W. MacDonald 68k • written 5.3 years ago by abf ▴ 30

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690

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rna seq

5.3 years ago adeler001 • 0

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1.1k

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rna seq SGSeq Alternative splicing

updated 5.4 years ago by Leonard Goldstein ▴ 260 • written 5.4 years ago by 116100016 • 0

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712

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deseq2 likelihood ratio rna seq wald test

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by adeler001 • 0

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1.6k

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limma voom RNA Seq Time-course experiments

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by mahes.muniandy • 0

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1.4k

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RNA seq wgcna

updated 5.8 years ago by Peter Langfelder ★ 3.0k • written 5.8 years ago by agustin.gonvi ▴ 20

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2.4k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.9 years ago Mozart ▴ 30

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1.9k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.1 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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