Bioconductor RNA seq

Showing : RNA seq • reset

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4.3k

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deseq2 mahattan plot RNA Seq

updated 5.3 years ago by bernatgel ▴ 150 • written 6.3 years ago by adeler001 • 0

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5.5k

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batch effect limma rna seq DE

updated 5.8 years ago by Steve Lianoglou ★ 13k • written 5.8 years ago by svlachavas ▴ 840

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1.6k

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RNA seq cpm

updated 5.8 years ago by Kevin Blighe ★ 4.0k • written 5.8 years ago by isabel.pieterse • 0

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1.6k

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sgseq alternative splicing rna seq

updated 18 months ago by Sara • 0 • written 6.2 years ago by 116100016 • 0

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1.4k

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edger RNA Seq

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by abf ▴ 30

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857

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rna seq

6.2 years ago adeler001 • 0

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1.5k

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rna seq SGSeq Alternative splicing

updated 6.3 years ago by Leonard Goldstein ▴ 260 • written 6.3 years ago by 116100016 • 0

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878

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deseq2 likelihood ratio rna seq wald test

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by adeler001 • 0

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1.6k

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volcano plot rna seq

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by adeler001 • 0

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2.0k

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limma voom RNA Seq Time-course experiments

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by mahes.muniandy • 0

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1.8k

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RNA seq wgcna

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by agustin.gonvi ▴ 20

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2.8k

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rna seq trimmomatic trimming adapter trimming paired analysis

6.8 years ago Mozart ▴ 30

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2.3k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

8.0 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

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