Showing : RNA seq • reset
0
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9
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4.1k
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How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 5.1 years ago by ▴ 150 • written 6.1 years ago by • 0
2
votes
5
replies
4.9k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 5.6 years ago by ★ 13k • written 5.6 years ago by ▴ 840
0
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3
replies
1.5k
views
Normalization of RNA seq data
RNA seq cpm
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
4
votes
4
replies
1.5k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 15 months ago by • 0 • written 6.0 years ago by • 0
1
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4
replies
1.3k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 30
0
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0
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817
views
searching for specific RNA sequences
rna seq
6.0 years ago adeler001 • 0
0
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2
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1.4k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 6.1 years ago by ▴ 260 • written 6.1 years ago by • 0
0
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1
reply
822
views
51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 6.2 years ago by 43k • written 6.2 years ago by • 0
0
votes
2
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1.5k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 6.2 years ago by 43k • written 6.2 years ago by • 0
1
vote
5
replies
1.9k
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 6.4 years ago by ★ 29k • written 6.4 years ago by • 0
5
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3
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1.7k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 6.4 years ago by ★ 3.0k • written 6.4 years ago by ▴ 20
1
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2
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2.7k
views
adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
6.5 years ago Mozart ▴ 30
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0
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2.2k
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Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
7.7 years ago lawarde.ankita1 ▴ 30
13 results • Page 1 of 1
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Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
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